Thursday, October 30, 2008

Strengthen Restrictions On Off-label Promotion By Pharmaceutical Companies, Researchers Urge

Strengthen Restrictions On Off-label Promotion By Pharmaceutical Companies, Researchers Urge

This is bullshit.  Off label uses of drugs allow for progress in people who don't have ANYTHING left to use.  Tis leads to progress.  The problem must be for greedy pharm companies looking to maximize their profits.  What about healing people?

I am getting an off label injection in my eyes tomorrow with the hopes of saving my eyesight.  Bless my doctor, because under these bozo's restrictions, he would be fined.  WHAT ABOUT PROGRESS?

We could always just go to another country......

Friday, October 24, 2008

The Christian Man's Evolution: How Darwinism and Faith Can Coexist

The Christian Man's Evolution: How Darwinism and Faith Can Coexist: Scientific American

What a great article! I think this is an excellent article on how faith can coexist with evolution. It came to my email inbox at an interesting time - rather prophetic. I hope you will read this when you get some time - and I would love to hear what you think!

Thursday, October 23, 2008

My research of Microevolution

Microevolution pdf

Microevolution powerpoint to be used in class

How to explain allele frequency

There are a number of factors that affect the rate of gene flow between
different populations. One of the most significant factors is mobility,
as greater mobility of an individual tends to give it greater migratory
potential. Animals tend to be more mobile than plants, although pollen
and seeds may be carried great distances by animals or wind.


The New Face of America


As an analogy, imagine representing organisms in a population with a
large number of marbles, half of them red and half blue. These two
colors correspond to the two different gene alleles present in the
population. Put 10 red and 10 blue marbles in a jar; this represents a
small population of these organisms. Each generation the organisms in
this population will reproduce at random and the old generation will
die. To see the effects of this, imagine randomly picking a marble from
the jar and putting a new marble of the same color as the one you
picked into a second jar. After your selected marble has "reproduced",
put it back, mix the marbles, and pick another. After you have done
this 20 times, the second jar will contain 20 "offspring" marbles of
various colors. This represents the next generation of organisms. Now
throw away the marbles remaining in the first jar - since the older
generation of organisms eventually die - and repeat this process over
several generations.


Since the numbers of red and blue marbles you pick out will
fluctuate by chance, the more common color in the population of marbles
will change over time, sometimes more red: sometimes more blue. It is
even possible that you may, purely by chance, lose all of one color and
be left with a jar containing only blue or red offspring. When the jar
only contains one color (allele), say red, the other allele, in this
case the blue, has been removed or "lost" and the remaining allele
(red) becomes fixed. Given enough time, especially in a small
population, this outcome is nearly inevitable. This is genetic drift -
random variations in which organisms manage to reproduce, leading to
changes over time in the allele frequencies of a population.


An example of a bottleneck:

Northern elephant seals have reduced genetic variation probably because
of a population bottleneck humans inflicted on them in the 1890s. Hunting
reduced their population size to as few as 20 individuals at the end of the 19th
century. Their population has since rebounded to over 30,000—but
their genes still
carry the marks of this bottleneck: they have much less genetic variation
than a population of southern elephant seals that was not so intensely
hunted.

The cheetah has unusually low genetic variability and a very low sperm count, which also suffers from low motility and deformed flagellae[6].
Skin grafts between non-related cheetahs illustrate this point in that
there is no rejection of the donor skin. It is thought that it went
through a prolonged period of inbreeding following a genetic bottleneck during the last ice age.

Founder effects

A founder
effect
occurs when a new colony is started by a few members of the original
population. This small population size means that the colony may have:


  • reduced genetic variation from the original population.
  • a non-random sample of the genes in the original population.

For example, the Afrikaner population of Dutch settlers in South Africa
is descended mainly from a few colonists. Today, the Afrikaner population
has an unusually high frequency of the gene that causes Huntington’s
disease, because those original Dutch colonists just happened to carry
that gene with unusually high
frequency. This effect is easy to recognize
in genetic diseases, but of course, the frequencies of all sorts of genes
are affected by founder events.


PROS AND CONS OF INBREEDING


Copyright 1996, Sarah Hartwell

Adapted, with permission, from Cat
 Recourse Archive and
edited by Dog Breed Info.


Inbreeding is the mating together of closely related dogs, for
example mother/son, father/daughter and sibling/sibling matings. For
breeders, it is a useful way of fixing traits in a breed - the pedigrees
of some exhibition dogs show that many of their forebears are closely
related. For example, there is a famous cat by the name of Fan Tee Cee (shown in the 1960s and
1970s) appeared in more and more Siamese pedigrees, sometimes several
times in a single pedigree, as breeders were anxious to make their lines
more typey. Superb specimens are always much sought after for stud
services or offspring (unless they have already been neutered!) having
won the approval of show judges.


However, inbreeding holds potential problems. The limited genepool
caused by continued inbreeding means that deleterious genes become
widespread and the breed loses vigor. Laboratory animal suppliers
depend on this to create uniform strains of animal which are immuno-depressed
or breed true for a particular disorder e.g. epilepsy. Such animals are
so inbred as to be genetically identical (clones!), a situation normally
only seen in identical twins. Similarly, a controlled amount of
inbreeding can be used to fix desirable traits in farm livestock e.g.
milk yield, lean/fat ratios, rate of growth etc.


To some extent humans
even have done this themselves.
A Viking who wanted to have strong sons
might marry a strong woman. A woman who wanted to make sure her family
was well provided for might select a loyal and reliable man who had good
hunting skills - or is a good farmer  . A tribal leader who wanted
to make sure that he produced many children might only marry a woman who
had already borne a child, proving her fertility.


Inbreeding
and Genetics



Stabilizing Selection. A good classic example of this is human birth weight. Babies of low
weight lose heat more quickly and get ill from infectious disease more
easily, whereas babies of large body weight are more difficult to
deliver through the pelvis. However, the recent improvements in human
nutrition in developed countries has led to rising rates of caesarean sections, since babies are routinely out-growing the female reproductive tract.[1]


Directional Selection.  A useful example can be found in the breeding
of the greyhound dog
. Early breeders were interested in dog with the greatest
speed. They carefully selected from a group of hounds those who ran the
fastest. From their offspring, the greyhound breeders again selected those
dogs who ran the fastest. By continuing this selection for those dogs
who ran faster than most of the hound dog population, they gradually produced
a dog who could run up to 64km/h (40mph).

Disruptive Selection. Disruptive selection, like directional selection, favors the extremes
traits in a population. Disruptive selection differs in that sudden changes
in the environment creates a sudden forces favoring that extreme. Think
about the changes in the environment when that meteor crashed into Earth
65mya. A sudden decrease in light levels as the dust rose over large portions
of the Earth. Extremely large tidal waves washing miles over the land.
Increased seismic activity. The sudden lost of food along the coast, possible
plague due to the high initial death rate, dust filling the lungs of animals
would have been the most stressful on larger animals. Large animals need
a large oxygen supply to supply energy to their muscles. They also need
a large, constant supply of food. The the sudden drop of oxygen due the
the dust, and the drop in fresh food, large animals would be stressed.
If a plague started by the high death rate also hit these stressed animals,
they would have been sorely pushed to survive. Evidence shows that they
did not. So disruptive selection occurs quickly, selecting for those extreme
traits that help organisms survive in the new environmental conditions.

The Measure of "Fitness"


Directional Selection


A population may find itself in circumstances where individuals
occupying one extreme in the range of phenotypes are favored over the
others.

Since 1973, Peter and Rosemary Grant — aided by a succession of
colleagues — have studied Darwin's finches in the Galapagos Islands.


Link to drawings of Darwin's finches.


When rainfall, and thus food, are plentiful, the ground finches tend to



  • have a varied diet, e.g., eat seeds of a range of sizes;
  • show considerable variation in body and beak size (large beaks
    are better for large seeds but can handle small seeds as well as small
    beaks).
From 1976 through 1977, a severe drought struck the islands,
with virtually no rainfall for over a year. This caused a precipitous
decline in the production of the seeds that are the dietary mainstay of
Geospiza fortis, the medium ground finch.

The graph (from P. T. Boag and P. R. Grant in Science 214:82,
1981) shows how the population declined from 1400 to 200 on the island
of Daphne Major, a tiny (10-acre) member of the Galapagos Islands.
Link to map.


One of the plants to make it through the drought produces seeds in
large, tough fruits that are virtually impossible for birds with a beak
smaller than 10.5 mm to eat.



Sampling the birds that died as well as those that survived showed that
  • the larger birds were favored over the smaller ones;
  • those with larger beaks were favored over those with smaller ones.



Wednesday, October 22, 2008

Antibiotic Resistance is Really Scary!

In this article from the FDA they talk about how there is a vicious cycle going on of antibiotic overuse.  And why did this happen?  Because we were really dumb in the 80's, and we thought we had kicked bacteria's butt.  And then, the super bugs emerged.

I think its really interesting to talk about "survival of the fittest" when it comes to these bacteria.  If you take only 9 days of antibiotics, instead of all ten, you kill the weakest bacteria first, then the stronger, but you stop at killing the strongest.  Then the bacteria mutate, and we're all in trouble.

Many of us have come to take antibiotics for granted. A child develops
strep throat or an ear infection, and soon a bottle of "pink medicine"
makes everything better. An adult suffers a sinus headache, and
antibiotic pills quickly control it. But infections can and do still
kill. Because of a complex combination of factors, serious infections
may be on the rise. While awaiting the next "wonder drug," we must
appreciate, and use correctly, the ones that we already have.


I think I am absolutely guilty of popping a few antibiotics at the first sign of infection, and then quitting my round before I am completely cured.  When you start to feel better, who feels like taking pills?

And then, to the reason we are doing the lab - which is that using antibacterial household cleaners and antiseptics that are extremely toxic leads to more resistance and mutations of bacteria.  There is a great article that talks about how the Antibacterial fad is going overboard.




Susceptibility of Bacteria to Household Disinfectants and Antiseptics